pat.transformation

Class ReadAffy

java.lang.Object

pat.transformation.ReadAffy

public class ReadAffy
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
ReadAffy()

Method Summary

Methods

Modifier and Type	Method and Description
static java.util.ArrayList<java.util.ArrayList>	annotateArray(java.util.ArrayList<java.util.ArrayList> inputArray, java.lang.String annotationFile)
static void	anotherZTransform(java.util.ArrayList<java.util.ArrayList> inputArray)
static java.util.ArrayList<java.util.ArrayList>	readArray(java.lang.String filename)
static java.util.ArrayList<java.lang.String>	removeQoute(java.util.ArrayList inputArray)
static void	zTransform(java.util.ArrayList<java.util.ArrayList> inputArray)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReadAffy

public ReadAffy()

Method Detail

readArray

public static java.util.ArrayList<java.util.ArrayList> readArray(java.lang.String filename)
                                                          throws java.lang.Exception

Throws:

java.lang.Exception

removeQoute

public static java.util.ArrayList<java.lang.String> removeQoute(java.util.ArrayList inputArray)
                                                         throws java.lang.Exception

Throws:

java.lang.Exception

annotateArray

public static java.util.ArrayList<java.util.ArrayList> annotateArray(java.util.ArrayList<java.util.ArrayList> inputArray,
                                                     java.lang.String annotationFile)
                                                              throws java.lang.Exception

Throws:

java.lang.Exception

zTransform

public static void zTransform(java.util.ArrayList<java.util.ArrayList> inputArray)
                       throws java.lang.Exception

Throws:

java.lang.Exception

anotherZTransform

public static void anotherZTransform(java.util.ArrayList<java.util.ArrayList> inputArray)
                              throws java.lang.Exception

Throws:

java.lang.Exception